STRINGSTRING
pqqE protein (Pelagibaca bermudensis) - STRING interaction network
"pqqE" - Pyrroloquinoline quinone biosynthesis protein E in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqqEPyrroloquinoline quinone biosynthesis protein E (369 aa)    
Predicted Functional Partners:
pqqB
Pyrroloquinoline quinone biosynthesis protein B ; May be involved in the transport of PQQ or its precursor to the periplasm (298 aa)
 
   
  0.990
pqqC
Pyrroloquinoline quinone biosynthesis protein C ; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ (249 aa)
 
   
  0.988
R2601_04898
Coenzyme PQQ synthesis protein D (91 aa)
 
     
  0.946
R2601_04958
Putative methanol dehydrogenase protein, large subunit (600 aa)
 
     
  0.840
R2601_18770
Quinoprotein ethanol dehydrogenase (588 aa)
 
     
  0.829
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (343 aa)
       
  0.793
R2601_04763
Glucose dehydrogenase (741 aa)
 
     
  0.766
R2601_27051
Transcriptional regulator, AsnC family protein (153 aa)
   
 
  0.669
R2601_26091
Transcriptional regulator, AsnC family protein (161 aa)
   
 
  0.669
R2601_22382
Transcriptional regulator, AsnC family protein (151 aa)
   
 
  0.669
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]