Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Coenzyme PQQ synthesis protein D (91 aa)
Predicted Functional Partners:
Pyrroloquinoline quinone biosynthesis protein B ; May be involved in the transport of PQQ or its precursor to the periplasm (298 aa)
Pyrroloquinoline quinone biosynthesis protein C ; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ (249 aa)
Pyrroloquinoline quinone biosynthesis protein E (369 aa)
Uncharacterized protein (30 aa)
Uncharacterized protein (142 aa)
Uncharacterized protein (204 aa)
Uncharacterized protein (269 aa)
Uncharacterized protein (163 aa)
Uncharacterized protein (222 aa)
Putative methanol dehydrogenase protein, large subunit (600 aa)
Your Current Organism:
NCBI taxonomy Id: 314265 Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601