Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Pyrroloquinoline quinone biosynthesis protein B ; May be involved in the transport of PQQ or its precursor to the periplasm (298 aa)
Predicted Functional Partners:
Pyrroloquinoline quinone biosynthesis protein C ; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ (249 aa)
Pyrroloquinoline quinone biosynthesis protein E (369 aa)
Coenzyme PQQ synthesis protein D (91 aa)
Putative methanol dehydrogenase protein, large subunit (600 aa)
Quinoprotein ethanol dehydrogenase (588 aa)
Uncharacterized protein (30 aa)
Glucose dehydrogenase (741 aa)
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose (292 aa)
Transport permease protein (264 aa)
Sensor histidine kinase (473 aa)
Your Current Organism:
NCBI taxonomy Id: 314265 Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601