STRINGSTRING
R2601_04923 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_04923" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_04923Uncharacterized protein (333 aa)    
Predicted Functional Partners:
R2601_04918
Pyridoxal phosphate aminotransferase (436 aa)
 
  0.992
R2601_00835
Putative aminotransferase (427 aa)
 
  0.929
fabG
3-ketoacyl-(Acyl-carrier-protein) reductase (259 aa)
 
          0.913
R2601_04933
Uncharacterized protein (222 aa)
 
          0.691
R2601_07861
Diaminobutyrate--2-oxoglutarate aminotransferase (424 aa)
   
 
  0.665
R2601_17719
Homoserine dehydrogenase (428 aa)
   
 
  0.643
R2601_08998
Threonine synthase (463 aa)
       
  0.598
R2601_15447
DNA polymerase I (935 aa)
   
        0.563
R2601_04098
Uncharacterized protein (168 aa)
   
          0.550
R2601_03343
Gamma-BHC dehydrochlorinase (188 aa)
   
          0.517
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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