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R2601_05063 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05063" - WD domain/cytochrome c family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05063WD domain/cytochrome c family protein (436 aa)    
Predicted Functional Partners:
R2601_05068
Formate dehydrogenase, gamma subunit (404 aa)
 
          0.912
R2601_10494
Cytochrome cy (169 aa)
   
0.853
R2601_09210
Binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein (692 aa)
     
    0.837
R2601_11169
Uncharacterized protein (80 aa)
   
          0.712
R2601_05123
Uncharacterized protein (164 aa)
 
          0.688
R2601_05078
Formate dehydrogenase, alpha subunit, putative (971 aa)
 
          0.674
R2601_05088
Chaperone, TorD family protein (209 aa)
 
          0.665
R2601_05098
Molybdopterin-guanine dinucleotide biosynthesis protein A (177 aa)
 
          0.650
R2601_20436
Acetylpolyamine aminohydrolase (340 aa)
   
  0.639
R2601_05093
Uncharacterized protein (213 aa)
 
          0.632
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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