STRINGSTRING
R2601_05093 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05093" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05093Uncharacterized protein (213 aa)    
Predicted Functional Partners:
R2601_05098
Molybdopterin-guanine dinucleotide biosynthesis protein A (177 aa)
 
          0.973
R2601_05088
Chaperone, TorD family protein (209 aa)
 
          0.966
R2601_05068
Formate dehydrogenase, gamma subunit (404 aa)
 
          0.837
R2601_05078
Formate dehydrogenase, alpha subunit, putative (971 aa)
 
          0.790
R2601_05103
Iron-sulfur cluster-binding protein (638 aa)
 
          0.788
R2601_05123
Uncharacterized protein (164 aa)
 
          0.784
R2601_05118
Uncharacterized protein (236 aa)
 
          0.784
R2601_05108
Uncharacterized protein (63 aa)
 
          0.708
R2601_26991
Uncharacterized protein (311 aa)
   
          0.688
R2601_26986
Uncharacterized protein (593 aa)
   
          0.672
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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