STRINGSTRING
R2601_05108 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05108" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05108Uncharacterized protein (63 aa)    
Predicted Functional Partners:
R2601_05118
Uncharacterized protein (236 aa)
 
          0.970
R2601_05123
Uncharacterized protein (164 aa)
 
          0.961
R2601_05103
Iron-sulfur cluster-binding protein (638 aa)
 
          0.930
R2601_05113
Iron-sulfur cluster carrier protein ; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP (354 aa)
              0.870
R2601_05068
Formate dehydrogenase, gamma subunit (404 aa)
 
          0.748
R2601_05093
Uncharacterized protein (213 aa)
 
          0.708
R2601_07821
Cytochrome c family protein (135 aa)
   
          0.639
R2601_05128
ATP-binding region, ATPase-like-Histidine kinase, HAMP region-Histidine kinase A, N-terminal (647 aa)
              0.627
R2601_05133
SirA family protein (87 aa)
              0.617
R2601_13915
Uncharacterized protein (182 aa)
   
          0.614
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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