STRINGSTRING
R2601_05133 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05133" - SirA family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05133SirA family protein (87 aa)    
Predicted Functional Partners:
R2601_26881
Putative aminotransferase (344 aa)
     
  0.995
R2601_22377
Uroporphyrin-III C-methyltransferase (150 aa)
       
    0.875
R2601_19080
Uroporphyrinogen-III methylase, c-terminal half (275 aa)
       
    0.875
R2601_05938
Uroporphyrin-III C-methyltransferase (245 aa)
       
    0.875
R2601_05128
ATP-binding region, ATPase-like-Histidine kinase, HAMP region-Histidine kinase A, N-terminal (647 aa)
         
  0.848
R2601_05113
Iron-sulfur cluster carrier protein ; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP (354 aa)
 
          0.667
R2601_05123
Uncharacterized protein (164 aa)
              0.617
R2601_05118
Uncharacterized protein (236 aa)
              0.617
R2601_05108
Uncharacterized protein (63 aa)
              0.617
R2601_05103
Iron-sulfur cluster-binding protein (638 aa)
              0.564
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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