STRINGSTRING
R2601_05168 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05168" - Putative integral membrane protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05168Putative integral membrane protein (221 aa)    
Predicted Functional Partners:
R2601_05173
Uncharacterized protein (535 aa)
          0.989
R2601_05178
Uncharacterized protein (309 aa)
 
          0.967
R2601_05198
Putative glycosyl transferase (345 aa)
 
          0.947
R2601_05193
Probable permease of ABC transporter (523 aa)
 
          0.805
R2601_05183
Uncharacterized protein (329 aa)
 
          0.790
R2601_05188
ABC transporter related protein (265 aa)
              0.720
R2601_05163
Cytochrome B561 (183 aa)
 
          0.696
R2601_10414
Riboflavin biosynthesis protein RibD ; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate (350 aa)
       
    0.593
R2601_21261
Uncharacterized protein (150 aa)
   
          0.537
R2601_01005
TRAP dicarboxylate transporter, DctQ subunit (166 aa)
   
          0.496
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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