STRINGSTRING
R2601_05188 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05188" - ABC transporter related protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05188ABC transporter related protein (265 aa)    
Predicted Functional Partners:
R2601_05183
Uncharacterized protein (329 aa)
 
 
  0.983
R2601_05193
Probable permease of ABC transporter (523 aa)
 
 
  0.981
R2601_11789
ABC transporter, permease protein (279 aa)
 
  0.922
R2601_08156
Nitrate transporter component, nrtA (391 aa)
 
  0.922
R2601_21562
ABC transporter permease protein (277 aa)
 
  0.920
R2601_08161
ABC-type nitrate/sulfonate/bicarbonate transport systems (453 aa)
 
  0.920
R2601_02393
Binding-protein-dependent transport systems inner membrane component (256 aa)
 
  0.912
R2601_02448
Putative transporter (282 aa)
 
  0.904
R2601_10899
Taurine ABC transporter, permease protein (421 aa)
 
  0.903
R2601_08166
ABC-type nitrate/sulfonate/bicarbonate transport system (360 aa)
 
 
  0.889
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]