STRINGSTRING
R2601_05198 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05198" - Putative glycosyl transferase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05198Putative glycosyl transferase (345 aa)    
Predicted Functional Partners:
R2601_05173
Uncharacterized protein (535 aa)
 
          0.948
R2601_05168
Putative integral membrane protein (221 aa)
 
          0.947
R2601_05178
Uncharacterized protein (309 aa)
 
          0.922
R2601_05193
Probable permease of ABC transporter (523 aa)
 
          0.905
R2601_05188
ABC transporter related protein (265 aa)
 
          0.876
R2601_05183
Uncharacterized protein (329 aa)
 
          0.865
R2601_05163
Cytochrome B561 (183 aa)
 
          0.606
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
              0.451
tdh
L-threonine 3-dehydrogenase (345 aa)
              0.451
R2601_21442
L-iditol 2-dehydrogenase (342 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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