STRINGSTRING
R2601_05223 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05223" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05223Uncharacterized protein (328 aa)    
Predicted Functional Partners:
R2601_05233
Uncharacterized protein (438 aa)
 
 
  0.968
R2601_05228
Uncharacterized protein (200 aa)
 
 
  0.965
R2601_05238
Uncharacterized protein (415 aa)
 
 
  0.940
R2601_05218
Putative GntR-family transcription regulator (218 aa)
 
          0.907
R2601_19065
Putative decarboxylase (416 aa)
 
 
  0.864
R2601_05243
Malonyl-CoA synthase (499 aa)
 
        0.821
R2601_23123
TRAP-type C4-dicarboxylate transport system, large permease component (428 aa)
 
 
  0.767
R2601_20346
Probable transporter (427 aa)
 
 
  0.757
R2601_06028
Uncharacterized protein (414 aa)
 
 
  0.756
R2601_07668
TRAP dicarboxylate transporter, DctM subunit (427 aa)
 
 
  0.754
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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