STRINGSTRING
R2601_05243 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05243" - Malonyl-CoA synthase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05243Malonyl-CoA synthase (499 aa)    
Predicted Functional Partners:
R2601_02553
Carnitinyl-CoA dehydratase (260 aa)
 
  0.972
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
  0.957
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
  0.957
R2601_05238
Uncharacterized protein (415 aa)
 
     
  0.946
R2601_23595
Glutaryl-CoA dehydrogenase (406 aa)
 
 
  0.913
R2601_26111
Acyl-CoA dehydrogenase (379 aa)
 
  0.913
R2601_20034
Acyl-CoA dehydrogenase (384 aa)
 
  0.913
R2601_02563
Acyl-CoA dehydrogenase (386 aa)
 
  0.913
R2601_00540
Acyl-CoA dehydrogenase (386 aa)
 
  0.913
R2601_00015
Acyl-CoA dehydrogenase (380 aa)
 
  0.913
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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