STRINGSTRING
R2601_05248 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05248" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05248Uncharacterized protein (233 aa)    
Predicted Functional Partners:
R2601_05253
Putative gluconate dehydrogenase (589 aa)
  0.999
R2601_05258
Putative cytochrome C (450 aa)
     
  0.986
R2601_20244
Choline dehydrogenase ; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate (552 aa)
   
  0.821
R2601_10594
Putative alcohol dehydrogenase protein (526 aa)
   
  0.821
R2601_07996
Choline dehydrogenase (513 aa)
   
  0.821
R2601_06208
Glucose-methanol-choline oxidoreductase (528 aa)
   
  0.821
R2601_00630
Glucose-methanol-choline oxidoreductase-GMC oxidoreductase (533 aa)
   
  0.821
R2601_26306
Diheme cytochrome c-type (299 aa)
 
     
  0.706
R2601_16922
D-isomer specific 2-hydroxyacid dehydrogenase family protein (319 aa)
         
  0.639
R2601_15150
2-hydroxyacid dehydrogenase (328 aa)
         
  0.639
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]