STRINGSTRING
R2601_05373 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05373" - Probable transcriptional regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05373Probable transcriptional regulator (223 aa)    
Predicted Functional Partners:
R2601_05378
Thioesterase superfamily protein (142 aa)
 
          0.870
R2601_05383
CaiB/BaiF family protein (417 aa)
         
  0.833
R2601_05363
Uncharacterized protein (379 aa)
 
          0.809
R2601_05353
Uncharacterized protein (333 aa)
 
     
  0.753
R2601_19704
Regulatory protein, IclR (205 aa)
   
          0.749
R2601_06198
Transcriptional regulatory protein (271 aa)
   
          0.746
R2601_00240
Transcriptional Regulator, IclR family protein (251 aa)
   
          0.692
R2601_01370
Transcriptional regulator, IclR family protein (280 aa)
   
          0.673
R2601_06478
Uncharacterized protein (264 aa)
   
          0.659
R2601_05328
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (213 aa)
 
     
  0.642
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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