STRINGSTRING
R2601_05378 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05378" - Thioesterase superfamily protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05378Thioesterase superfamily protein (142 aa)    
Predicted Functional Partners:
R2601_05373
Probable transcriptional regulator (223 aa)
 
          0.870
R2601_05383
CaiB/BaiF family protein (417 aa)
              0.859
R2601_05363
Uncharacterized protein (379 aa)
 
          0.734
R2601_04093
Probable short-chain dehydrogenase (104 aa)
   
          0.635
R2601_20024
Probable short-chain dehydrogenase (306 aa)
   
          0.584
R2601_05368
Acetyl-CoA synthetase (Acetate-CoA ligase) (525 aa)
 
          0.532
R2601_05353
Uncharacterized protein (333 aa)
 
          0.493
R2601_00525
Uncharacterized protein (140 aa)
   
          0.474
R2601_02838
Uncharacterized protein (278 aa)
   
          0.438
R2601_03663
Uncharacterized protein (137 aa)
 
          0.401
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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