STRINGSTRING
R2601_05403 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05403" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05403Uncharacterized protein (494 aa)    
Predicted Functional Partners:
R2601_05408
Transporter (124 aa)
 
        0.942
R2601_10964
Geranylgeranyl pyrophosphate synthetase (289 aa)
   
 
  0.826
R2601_11886
Decaprenyl diphosphate synthase (331 aa)
   
 
  0.824
idi
Isopentenyl pyrophosphate isomerase ; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP) (173 aa)
       
  0.782
R2601_00255
FAD linked oxidase (946 aa)
       
  0.649
R2601_23640
Putative D-lactate dehydrogenase (Cytochrome), FAD/FMN-containing oxidoreductase (457 aa)
       
  0.641
R2601_22686
FAD/FMN-containing dehydrogenase (457 aa)
       
  0.641
R2601_15607
Glycolate oxidase, GlcD subunit (480 aa)
       
  0.641
R2601_15602
Glycolate oxidase, GlcE subunit (370 aa)
       
  0.641
R2601_09018
Oxidoreductase, FAD-binding protein (471 aa)
       
  0.641
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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