STRINGSTRING
R2601_05418 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05418" - Putative hydrolase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05418Putative hydrolase (727 aa)    
Predicted Functional Partners:
R2601_05413
Putative hydrolase (460 aa)
 
 
  0.997
R2601_24589
Putative 4-alpha-glucanotransferase (199 aa)
 
  0.987
R2601_24594
Putative 4-alpha-glucanotransferase (413 aa)
 
  0.986
R2601_04753
Glycogen operon protein GlgX homolog (694 aa)
 
 
  0.974
R2601_24599
Glycogen operon protein GlgX homolog (680 aa)
 
 
  0.973
R2601_24654
Probable alpha-glucosidase protein (551 aa)
 
 
0.903
R2601_24614
1,4-alpha-glucan branching enzyme (682 aa)
 
 
  0.887
R2601_07728
Putative trehalase (482 aa)
 
 
    0.749
R2601_25436
Glycosidase (577 aa)
   
 
  0.747
R2601_24864
Glucosyl-glycerol-phosphate synthase (504 aa)
   
 
  0.685
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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