STRINGSTRING
R2601_05458 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05458" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05458Uncharacterized protein (445 aa)    
Predicted Functional Partners:
R2601_05463
Uncharacterized protein (752 aa)
 
          0.973
R2601_23208
Cytochrome-c oxidase chain II/c (319 aa)
   
 
  0.820
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
   
 
  0.794
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
   
 
  0.794
R2601_05453
Uncharacterized protein (514 aa)
              0.763
R2601_16130
Serine protease (389 aa)
   
 
      0.676
R2601_05873
Cob(I)yrinic acid a,c-diamide adenosyltransferase (207 aa)
   
 
  0.673
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
   
  0.635
R2601_15452
Peptidase S8 and S53, subtilisin, kexin, sedolisin (408 aa)
   
 
      0.631
R2601_05468
Uncharacterized protein (209 aa)
              0.629
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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