STRINGSTRING
R2601_05483 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05483" - Putative peroxidase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05483Putative peroxidase (569 aa)    
Predicted Functional Partners:
R2601_05478
Cytochrome P450-like protein (432 aa)
        0.929
R2601_05473
Glutathione S-transferase (263 aa)
 
          0.921
R2601_05493
Uncharacterized protein (213 aa)
              0.868
R2601_05488
Uncharacterized protein (337 aa)
              0.847
R2601_04183
Cytochrome P450-like protein (391 aa)
   
          0.727
R2601_01220
TRAP-T family transporter, DctP (Periplasmic binding) subunit (352 aa)
   
          0.648
R2601_20676
Uncharacterized protein (312 aa)
   
          0.566
R2601_17714
Beta-lactamase (297 aa)
   
        0.552
R2601_16745
Putative porin (351 aa)
   
          0.552
R2601_07836
Uncharacterized protein (277 aa)
   
          0.543
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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