STRINGSTRING
R2601_05508 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05508" - Efflux transporter, RND family, MFP subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05508Efflux transporter, RND family, MFP subunit (355 aa)    
Predicted Functional Partners:
R2601_05513
Transporter, AcrB/AcrD/AcrF family protein (1016 aa)
 
          0.965
R2601_05503
Transcriptional regulator, MarR family protein (161 aa)
 
          0.895
R2601_27228
MotA/TolQ/ExbB proton channel family protein (222 aa)
   
          0.589
R2601_25961
Uncharacterized protein (273 aa)
   
          0.523
R2601_05498
Uncharacterized protein (27 aa)
              0.466
R2601_25971
Uncharacterized protein (787 aa)
   
          0.431
R2601_02668
Efflux transporter, RND family, MFP subunit (376 aa)
   
          0.430
R2601_10634
Uncharacterized protein (179 aa)
   
          0.417
R2601_26991
Uncharacterized protein (311 aa)
   
          0.416
R2601_27238
Uncharacterized protein (129 aa)
   
          0.415
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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