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R2601_05513 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05513" - Transporter, AcrB/AcrD/AcrF family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05513Transporter, AcrB/AcrD/AcrF family protein (1016 aa)    
Predicted Functional Partners:
R2601_02668
Efflux transporter, RND family, MFP subunit (376 aa)
 
  0.971
R2601_21457
RND multidrug efflux membrane permease (401 aa)
 
  0.967
R2601_12790
Cation/multidrug efflux pump, membrane-fusion protein (397 aa)
 
  0.967
R2601_21236
Probable protein secretion protein, HlyD family (348 aa)
 
  0.965
R2601_05508
Efflux transporter, RND family, MFP subunit (355 aa)
 
          0.965
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
 
  0.926
R2601_21447
Nodulation protein (453 aa)
   
  0.913
R2601_21251
Nodulation protein T (377 aa)
   
  0.913
R2601_05503
Transcriptional regulator, MarR family protein (161 aa)
 
          0.868
R2601_26326
Efflux transporter, RND family, MFP subunit (441 aa)
 
 
  0.753
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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