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R2601_05543 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05543" - ABC sugar transporter, periplasmic binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05543ABC sugar transporter, periplasmic binding protein (404 aa)    
Predicted Functional Partners:
R2601_05548
ABC sugar transporter, inner membrane subunit (307 aa)
 
   
    0.995
R2601_05553
ABC sugar transporter, inner membrane subunit (277 aa)
 
   
    0.995
R2601_05563
Putative oxidoreductase myo-inositol 2-dehydrogenase (331 aa)
 
          0.903
R2601_05558
Putative D-tagatose 3-epimerase (295 aa)
 
          0.878
R2601_05538
Esterase/lipase/thioesterase (303 aa)
 
          0.866
R2601_05533
Transcriptional regulator, GntR family protein (233 aa)
 
          0.846
R2601_03088
ABC transporter, membrane spanning protein (Sugar) (293 aa)
 
   
    0.750
R2601_26531
Probable sorbitol/mannitol transport inner membrane protein (276 aa)
 
   
    0.750
R2601_05528
ABC sugar transporter, ATPase subunit (358 aa)
 
   
    0.733
R2601_03098
ABC transporter, membrane spanning protein (Sugar) (307 aa)
 
   
    0.718
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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