STRINGSTRING
R2601_05568 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05568" - ABC transporter, periplasmic substrate-binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05568ABC transporter, periplasmic substrate-binding protein (301 aa)    
Predicted Functional Partners:
R2601_05583
Putative choline uptake ABC transporter permease protein (246 aa)
 
  0.999
R2601_05573
Putative choline uptake ABC transporter permease protein (389 aa)
 
  0.998
R2601_05578
ATP/GTP-binding site motif A (P-loop)-ABC transporter-AAA ATPase (311 aa)
 
  0.996
R2601_20219
ABC glycine betaine/L-proline transporter, inner membrane subunit (278 aa)
 
 
    0.910
R2601_01668
ABC Glycine betaine/L-proline transporter, inner membrane subunit (328 aa)
 
 
    0.833
R2601_13419
Transcriptional regulatory protein (139 aa)
 
          0.518
R2601_05548
ABC sugar transporter, inner membrane subunit (307 aa)
   
        0.491
R2601_05563
Putative oxidoreductase myo-inositol 2-dehydrogenase (331 aa)
              0.490
R2601_05558
Putative D-tagatose 3-epimerase (295 aa)
              0.490
R2601_05553
ABC sugar transporter, inner membrane subunit (277 aa)
   
        0.480
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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