STRINGSTRING
R2601_05603 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05603" - Oxidoreductase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05603Oxidoreductase (323 aa)    
Predicted Functional Partners:
R2601_05613
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (403 aa)
 
 
  0.801
R2601_05558
Putative D-tagatose 3-epimerase (295 aa)
 
 
  0.800
R2601_00170
Uncharacterized protein (352 aa)
   
 
  0.758
R2601_22327
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (410 aa)
   
 
  0.731
R2601_19834
Aldo/keto reductase (286 aa)
 
  0.699
R2601_08711
Aldo/keto reductase (330 aa)
 
  0.696
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
   
  0.696
tdh
L-threonine 3-dehydrogenase (345 aa)
   
  0.696
R2601_21442
L-iditol 2-dehydrogenase (342 aa)
   
  0.696
R2601_03723
Zinc-containing alcohol dehydrogenase superfamily protein (104 aa)
   
  0.696
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]