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R2601_05638 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05638" - Putative hypothetical Gifsy-1 prophage protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05638Putative hypothetical Gifsy-1 prophage protein (138 aa)    
Predicted Functional Partners:
R2601_02013
Tryptophanyl-tRNA synthetase (333 aa)
   
          0.631
R2601_23850
Uncharacterized protein (285 aa)
   
          0.581
R2601_05643
His/Glu/Gln/Arg/opine family ABC transporter, permease protein (268 aa)
              0.578
R2601_05633
Probable glutamine synthetase (447 aa)
              0.578
R2601_11329
Uncharacterized protein (202 aa)
   
          0.482
R2601_05628
Glutamine amidotransferase, class I (226 aa)
              0.456
R2601_05623
Glutamine synthetase family protein (453 aa)
              0.456
R2601_15885
Uncharacterized protein (295 aa)
   
          0.448
R2601_15125
Uncharacterized protein (490 aa)
   
          0.433
R2601_00745
Uncharacterized protein (422 aa)
   
          0.425
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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