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rlmJ protein (Pelagibaca bermudensis) - STRING interaction network
"rlmJ" - 23S rRNA m6A2030 methyltransferase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmJ23S rRNA m6A2030 methyltransferase ; Specifically methylates the adenine in position 2030 of 23S rRNA (261 aa)    
Predicted Functional Partners:
R2601_05678
Uncharacterized protein (228 aa)
              0.741
R2601_17284
Uncharacterized protein (1579 aa)
 
          0.476
R2601_15417
Uncharacterized protein (867 aa)
   
          0.457
R2601_18298
Ribonuclease T2 family protein (207 aa)
              0.451
R2601_13644
Uncharacterized protein (679 aa)
   
          0.451
R2601_05673
Uncharacterized protein (140 aa)
              0.434
R2601_21031
Uncharacterized protein (131 aa)
   
          0.429
R2601_13634
Uncharacterized protein (291 aa)
   
          0.421
R2601_14225
Uncharacterized protein (371 aa)
   
          0.416
R2601_10534
Universal stress protein family protein (279 aa)
   
          0.414
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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