STRINGSTRING
R2601_05688 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05688" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05688Uncharacterized protein (215 aa)    
Predicted Functional Partners:
R2601_16550
Possible polysaccharide deacetylase (471 aa)
   
 
  0.911
R2601_01315
Polysaccharide deacetylase family protein (463 aa)
   
 
  0.911
R2601_00595
Dihydropyrimidinase (469 aa)
 
 
  0.828
R2601_06128
Putative decarboxylase (246 aa)
 
          0.779
R2601_05693
Putative hydantoin racemase (396 aa)
 
 
  0.770
R2601_11809
Dihydropyrimidinase (484 aa)
 
 
  0.607
R2601_13925
Dihydroorotase (427 aa)
   
 
  0.555
R2601_01903
Uncharacterized protein (188 aa)
   
          0.554
R2601_20336
Sugar isomerase (SIS) (285 aa)
 
          0.521
R2601_25736
Uncharacterized protein (274 aa)
 
          0.500
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]