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R2601_05793 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05793" - Amino acid ABC transporter, ATP-binding protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05793Amino acid ABC transporter, ATP-binding protein (245 aa)    
Predicted Functional Partners:
R2601_05788
ABC transporter permease protein (223 aa)
  0.993
R2601_05783
Uncharacterized protein (269 aa)
  0.984
R2601_09547
ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC (438 aa)
  0.981
R2601_20476
ABC amino acid transporter, inner membrane subunit (243 aa)
  0.977
R2601_20471
ABC amino acid transporter, inner membrane subunit (220 aa)
  0.976
R2601_09542
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein (410 aa)
 
 
  0.962
R2601_01803
Putative periplasmic binding abc transporter protein (258 aa)
 
  0.954
R2601_09537
Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein (339 aa)
  0.938
R2601_20466
ABC amino acid transporter, periplasmic ligand binding protein (276 aa)
 
  0.935
R2601_01813
Putative transport system permease abc transporter protein (276 aa)
   
  0.918
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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