STRINGSTRING
R2601_06078 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06078" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06078Uncharacterized protein (149 aa)    
Predicted Functional Partners:
R2601_06083
Uncharacterized protein (505 aa)
 
          0.918
R2601_06068
Uncharacterized protein (319 aa)
 
          0.865
R2601_06073
Citrate lyase, beta chain (287 aa)
              0.666
R2601_03068
Transcriptional regulator, GntR family protein (147 aa)
   
          0.562
R2601_01908
Putative signal peptide protein (193 aa)
   
          0.511
R2601_17928
Uncharacterized protein (144 aa)
   
          0.436
R2601_10859
Twin-arginine translocation pathway signal (252 aa)
   
          0.430
R2601_21662
Uncharacterized protein (185 aa)
   
          0.402
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]