STRINGSTRING
R2601_06083 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06083" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06083Uncharacterized protein (505 aa)    
Predicted Functional Partners:
R2601_06068
Uncharacterized protein (319 aa)
 
  0.974
R2601_00150
TctC protein (323 aa)
 
  0.972
R2601_19979
Bordetella uptake gene family protein (327 aa)
 
 
  0.969
R2601_06008
Uncharacterized protein (323 aa)
 
  0.960
R2601_19914
Uncharacterized protein (318 aa)
 
  0.954
R2601_02488
TRAP-T family transporter, periplasmic binding protein (319 aa)
 
  0.954
R2601_06078
Uncharacterized protein (149 aa)
 
          0.918
R2601_06073
Citrate lyase, beta chain (287 aa)
              0.660
R2601_00255
FAD linked oxidase (946 aa)
   
 
    0.614
R2601_19744
Putative ammonia monooxygenase (348 aa)
 
        0.526
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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