STRINGSTRING
R2601_06108 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06108" - Amidohydrolase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06108Amidohydrolase family protein (480 aa)    
Predicted Functional Partners:
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
   
 
  0.917
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
   
 
  0.882
R2601_06098
3-ketoacyl-(Acyl-carrier-protein) reductase (258 aa)
   
        0.862
R2601_06118
Uncharacterized protein (186 aa)
              0.859
R2601_06113
Uncharacterized protein (433 aa)
              0.859
R2601_06103
Putative NAD dependent epimerase/dehydratase (318 aa)
              0.859
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
 
    0.790
R2601_18593
Xaa-Pro dipeptidase (464 aa)
     
  0.736
R2601_18588
Uncharacterized protein (449 aa)
     
  0.736
R2601_10359
Xanthine dehydrogenase, A subunit (460 aa)
   
 
    0.700
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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