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R2601_06123 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06123" - Putative extracellular solute-binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06123Putative extracellular solute-binding protein (347 aa)    
Predicted Functional Partners:
R2601_07673
TRAP transporter, transmembrane protein, putative (183 aa)
 
   
    0.942
R2601_06118
Uncharacterized protein (186 aa)
 
   
    0.942
R2601_07668
TRAP dicarboxylate transporter, DctM subunit (427 aa)
 
   
    0.842
R2601_06113
Uncharacterized protein (433 aa)
 
   
    0.820
R2601_06128
Putative decarboxylase (246 aa)
 
          0.781
R2601_17429
TRAP dicarboxylate family transporter, DctM subunit (437 aa)
 
   
    0.694
R2601_01898
TRAP-type C4-dicarboxylate transport system, large permease component (437 aa)
 
   
    0.662
R2601_19939
Uncharacterized protein (430 aa)
 
   
    0.630
R2601_07683
UPF0317 protein R2601_07683 (271 aa)
 
          0.601
R2601_07663
Uncharacterized protein (224 aa)
 
          0.563
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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