STRINGSTRING
R2601_06188 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06188" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06188Uncharacterized protein (159 aa)    
Predicted Functional Partners:
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
       
    0.762
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
       
    0.762
R2601_06153
Uncharacterized protein (171 aa)
   
          0.735
R2601_03858
Uncharacterized protein (533 aa)
   
          0.605
R2601_12535
Uncharacterized protein (333 aa)
   
          0.540
R2601_03663
Uncharacterized protein (137 aa)
   
          0.467
R2601_12523
Aminotransferase class IV , putative D-alanine aminotransferase (287 aa)
   
          0.423
R2601_04098
Uncharacterized protein (168 aa)
   
          0.401
R2601_20044
Uncharacterized protein (126 aa)
   
          0.400
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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