STRINGSTRING
R2601_06233 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06233" - Homogentisate 1,2-dioxygenase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06233Homogentisate 1,2-dioxygenase (446 aa)    
Predicted Functional Partners:
R2601_06248
Maleylacetoacetate isomerase (209 aa)
 
 
  0.998
R2601_06238
Fumarylacetoacetase (413 aa)
 
   
  0.966
R2601_06243
Metallo-beta-lactamase family protein (322 aa)
 
          0.875
R2601_06228
Transcriptional regulator, MarR family protein (161 aa)
 
          0.831
R2601_25781
Glutathione S-transferase family protein (212 aa)
 
 
  0.646
R2601_26476
Glutathione S-transferase (217 aa)
 
 
  0.620
R2601_21727
Methylcrotonyl-CoA carboxylase, alpha subunit (648 aa)
     
        0.614
R2601_19539
Propionyl-CoA carboxylase, alpha subunit (666 aa)
     
        0.614
R2601_22701
Fumarylacetoacetate hydrolase family protein (280 aa)
   
   
  0.607
R2601_17449
Uncharacterized protein (231 aa)
   
   
  0.605
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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