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R2601_06243 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06243" - Metallo-beta-lactamase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06243Metallo-beta-lactamase family protein (322 aa)    
Predicted Functional Partners:
R2601_06238
Fumarylacetoacetase (413 aa)
 
          0.925
R2601_06233
Homogentisate 1,2-dioxygenase (446 aa)
 
          0.875
R2601_06248
Maleylacetoacetate isomerase (209 aa)
 
          0.796
R2601_06228
Transcriptional regulator, MarR family protein (161 aa)
 
          0.685
R2601_02538
3-hydroxybutyryl-CoA dehydrogenase (473 aa)
   
   
    0.602
R2601_04828
Uncharacterized protein (334 aa)
 
   
 
0.464
R2601_05333
Phenol 2-monooxygenase (640 aa)
              0.451
R2601_23615
Putative extracellular solute-binding protein (336 aa)
   
          0.425
R2601_06428
Rieske (2Fe-2S) region (312 aa)
   
          0.424
R2601_06783
Uncharacterized protein (90 aa)
   
          0.421
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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