STRINGSTRING
R2601_06248 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06248" - Maleylacetoacetate isomerase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06248Maleylacetoacetate isomerase (209 aa)    
Predicted Functional Partners:
R2601_06233
Homogentisate 1,2-dioxygenase (446 aa)
 
 
  0.998
R2601_06238
Fumarylacetoacetase (413 aa)
 
  0.997
R2601_17449
Uncharacterized protein (231 aa)
   
 
  0.989
R2601_06288
Glyoxalase family protein (180 aa)
 
 
  0.820
R2601_06243
Metallo-beta-lactamase family protein (322 aa)
 
          0.796
R2601_06228
Transcriptional regulator, MarR family protein (161 aa)
 
          0.776
R2601_22701
Fumarylacetoacetate hydrolase family protein (280 aa)
   
 
  0.687
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (570 aa)
     
    0.663
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
     
   
  0.663
rpsB
30S ribosomal protein S2 (255 aa)
     
        0.658
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (12%) [HD]