STRINGSTRING
R2601_06318 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06318" - INTEGRASE/RECOMBINASE in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06318INTEGRASE/RECOMBINASE (406 aa)    
Predicted Functional Partners:
R2601_07578
No annotation available (334 aa)
 
          0.868
R2601_06763
INTEGRASE/RECOMBINASE (334 aa)
 
          0.868
R2601_06753
Putative integrase (159 aa)
          0.841
R2601_06313
No annotation available (409 aa)
       
0.821
R2601_06328
No annotation available (184 aa)
   
          0.778
R2601_00615
Integrase/recombinase (184 aa)
   
          0.778
R2601_07568
No annotation available (409 aa)
       
0.616
R2601_00605
Putative integrase (409 aa)
       
0.616
R2601_19280
Uncharacterized protein (233 aa)
     
   
  0.472
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (451 aa)
     
   
  0.472
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]