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R2601_06368 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06368" - Transcriptional regulator, LysR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06368Transcriptional regulator, LysR family protein (305 aa)    
Predicted Functional Partners:
R2601_07688
Transcriptional regulatory protein (293 aa)
   
     
  0.802
R2601_00260
LysR-family transcriptional regulator (300 aa)
   
        0.780
R2601_17424
RuBisCO operon transcriptional regulator, CbbR (308 aa)
   
     
  0.769
R2601_13144
Pca operon transcriptional activator PcaQ (175 aa)
   
        0.766
R2601_23630
Probable transcription regulator protein (299 aa)
   
     
  0.762
R2601_02603
Transcriptional Regulator, LysR family protein (297 aa)
   
        0.757
R2601_06538
Uncharacterized protein (464 aa)
   
          0.756
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
   
          0.741
R2601_22586
Uncharacterized protein (449 aa)
   
          0.726
R2601_16640
Transcriptional regulator, LysR family protein (301 aa)
   
          0.705
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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