STRINGSTRING
R2601_06388 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06388" - Putative ferredoxin in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06388Putative ferredoxin (113 aa)    
Predicted Functional Partners:
R2601_06378
Uncharacterized protein (412 aa)
 
   
  0.972
R2601_12990
Glutamate synthase, large subunit (1537 aa)
     
 
  0.916
R2601_06428
Rieske (2Fe-2S) region (312 aa)
 
  0.904
R2601_06383
Uncharacterized protein (99 aa)
              0.859
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
  0.841
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
  0.841
R2601_01623
Putative aromatic-ring hydroxylating dioxygenase, alpha-subunit (418 aa)
 
  0.838
R2601_11389
Rieske 2Fe-2S domain protein (374 aa)
 
  0.836
R2601_18658
Putative aromatic-ring hydroxylating dioxygenase, alpha-subunit (412 aa)
 
  0.829
R2601_21927
Rieske (2Fe-2S) protein (356 aa)
   
  0.791
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (13%) [HD]