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R2601_06413 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06413" - Probable dehydrogenase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06413Probable dehydrogenase (378 aa)    
Predicted Functional Partners:
R2601_06408
4,5-dihydroxyphthalate decarboxylase (290 aa)
 
   
    0.957
R2601_06418
Ferredoxin-NADPH reductase (312 aa)
 
 
    0.933
R2601_06428
Rieske (2Fe-2S) region (312 aa)
 
 
    0.905
R2601_05613
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (403 aa)
   
 
  0.820
R2601_05558
Putative D-tagatose 3-epimerase (295 aa)
 
 
  0.811
R2601_22327
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein (410 aa)
 
 
  0.771
R2601_00170
Uncharacterized protein (352 aa)
   
 
  0.758
R2601_05563
Putative oxidoreductase myo-inositol 2-dehydrogenase (331 aa)
   
          0.715
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
   
  0.696
tdh
L-threonine 3-dehydrogenase (345 aa)
   
  0.696
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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