STRINGSTRING
R2601_06428 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06428" - Rieske in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06428Rieske (2Fe-2S) region (312 aa)    
Predicted Functional Partners:
R2601_06413
Probable dehydrogenase (378 aa)
 
 
    0.905
R2601_06388
Putative ferredoxin (113 aa)
 
  0.904
R2601_06418
Ferredoxin-NADPH reductase (312 aa)
 
 
  0.885
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
 
  0.850
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
 
  0.850
R2601_06408
4,5-dihydroxyphthalate decarboxylase (290 aa)
 
          0.827
R2601_08191
Nitrite reductase small subunit (110 aa)
   
  0.791
R2601_06378
Uncharacterized protein (412 aa)
   
   
    0.786
R2601_06453
Regulatory protein, MarR (155 aa)
 
          0.757
R2601_12990
Glutamate synthase, large subunit (1537 aa)
     
 
    0.755
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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