STRINGSTRING
R2601_06478 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06478" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06478Uncharacterized protein (264 aa)    
Predicted Functional Partners:
R2601_06488
3-oxoadipate CoA-transferase subunit B (231 aa)
 
     
  0.843
R2601_06483
3-oxoadipate CoA-transferase subunit A (239 aa)
 
     
  0.822
R2601_13129
Protocatechuate 3,4-dioxygenase beta subunit (241 aa)
 
     
  0.792
R2601_06493
Beta-ketothiolase protein (399 aa)
 
   
  0.789
R2601_19704
Regulatory protein, IclR (205 aa)
   
          0.777
R2601_06198
Transcriptional regulatory protein (271 aa)
   
          0.769
R2601_06473
Aldehyde dehydrogenase (492 aa)
   
   
  0.740
R2601_13124
Protocatechuate 3,4-dioxygenase alpha subunit (230 aa)
 
     
  0.733
R2601_13104
3-carboxy-cis,cis-muconate cycloisomerase (350 aa)
 
   
  0.716
R2601_01090
Putative transcription regulator protein (267 aa)
 
          0.689
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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