STRINGSTRING
R2601_06538 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06538" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06538Uncharacterized protein (464 aa)    
Predicted Functional Partners:
R2601_22586
Uncharacterized protein (449 aa)
   
          0.778
R2601_06378
Uncharacterized protein (412 aa)
   
          0.778
R2601_09892
Uncharacterized protein (365 aa)
   
          0.774
R2601_06823
Virulence VirC1 protein (239 aa)
   
          0.764
R2601_06798
Putative transcriptional regulator (124 aa)
   
          0.763
R2601_06953
Rhodanese-related sulfurtransferase (157 aa)
   
          0.761
R2601_06368
Transcriptional regulator, LysR family protein (305 aa)
   
          0.756
R2601_06833
T-DNA border endonuclease, VirD2 protein (782 aa)
   
          0.751
R2601_06498
Pca operon transcriptional activator PcaQ (134 aa)
   
          0.744
R2601_22911
Uncharacterized protein (372 aa)
   
          0.736
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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