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R2601_06543 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06543" - IS1111A/IS1328/IS1533 family transposase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06543IS1111A/IS1328/IS1533 family transposase (167 aa)    
Predicted Functional Partners:
R2601_16795
Transposase (170 aa)
          0.801
R2601_19020
Transposase (259 aa)
 
          0.778
R2601_19015
Putative transposase (73 aa)
   
          0.687
R2601_06553
NTP-binding protein (292 aa)
              0.623
R2601_06548
Uncharacterized protein (263 aa)
              0.623
R2601_06558
ISSpo9, transposase (310 aa)
              0.452
R2601_16765
Pyruvate kinase (478 aa)
       
    0.408
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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