STRINGSTRING
R2601_06583 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06583" - TonB-dependent receptor protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06583TonB-dependent receptor protein (294 aa)    
Predicted Functional Partners:
R2601_06348
Putative DNA-binding protein (368 aa)
 
 
  0.787
R2601_06593
Probable replication protein B (309 aa)
 
 
  0.667
R2601_07498
Uncharacterized protein (309 aa)
   
          0.591
R2601_15447
DNA polymerase I (935 aa)
       
 
  0.570
R2601_07153
Uncharacterized protein (221 aa)
   
          0.543
R2601_06783
Uncharacterized protein (90 aa)
 
          0.516
R2601_06578
Uncharacterized protein (355 aa)
              0.510
R2601_07213
DsbA-like thioredoxin domain protein (219 aa)
   
          0.507
R2601_27369
Putative transposase (652 aa)
   
   
  0.505
R2601_15835
Putative transposase (652 aa)
   
   
  0.505
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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