STRINGSTRING
R2601_06628 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06628" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06628Uncharacterized protein (105 aa)    
Predicted Functional Partners:
R2601_06623
Response regulator receiver-Transcriptional regulatory protein, C terminal (219 aa)
 
          0.942
R2601_06618
Histidine kinase (445 aa)
 
          0.941
R2601_06643
Uncharacterized protein (156 aa)
 
          0.923
R2601_06648
Oxidoreductase, FAD-binding, putative (735 aa)
 
          0.917
R2601_06633
Putative flavocytochrome (461 aa)
 
          0.914
R2601_06653
FAD-protein FMN transferase ; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein (326 aa)
 
          0.865
R2601_05363
Uncharacterized protein (379 aa)
   
          0.671
R2601_23965
Uncharacterized protein (124 aa)
   
          0.660
R2601_22866
Uncharacterized protein (124 aa)
   
          0.646
R2601_02923
Phosphonates-binding protein (306 aa)
   
          0.608
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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