STRINGSTRING
R2601_06763 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06763" - INTEGRASE/RECOMBINASE in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06763INTEGRASE/RECOMBINASE (334 aa)    
Predicted Functional Partners:
R2601_06758
No annotation available (451 aa)
 
          0.980
R2601_06753
Putative integrase (159 aa)
 
          0.973
R2601_07573
No annotation available (451 aa)
 
          0.868
R2601_06318
INTEGRASE/RECOMBINASE (406 aa)
 
          0.868
R2601_00610
INTEGRASE/RECOMBINASE (451 aa)
 
          0.868
R2601_06773
Uncharacterized protein (343 aa)
              0.783
R2601_06768
Probably methylase/helicase (732 aa)
              0.783
R2601_25911
Tyrosine recombinase XerD (141 aa)
   
          0.769
R2601_06748
Uncharacterized protein (230 aa)
              0.674
R2601_06743
Probably methylase/helicase (793 aa)
              0.660
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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