STRINGSTRING
R2601_06933 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06933" - Putative transposase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06933Putative transposase (237 aa)    
Predicted Functional Partners:
R2601_06928
Putative transposase (522 aa)
     
  0.980
R2601_24245
Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (494 aa)
     
  0.871
R2601_19809
ISPsy20, transposase IstA (188 aa)
          0.829
R2601_27374
Putative transposase (265 aa)
     
  0.829
R2601_19799
Putative transposase (200 aa)
 
          0.777
R2601_19814
ISPsy20, transposase IstB, transcriptional regulator, LysR family-fusion (200 aa)
 
          0.775
R2601_15447
DNA polymerase I (935 aa)
   
   
  0.774
R2601_19280
Uncharacterized protein (233 aa)
     
 
  0.540
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (451 aa)
     
 
  0.540
R2601_15802
Putative transposase (80 aa)
 
          0.518
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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