STRINGSTRING
R2601_06938 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_06938" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_06938Uncharacterized protein (220 aa)    
Predicted Functional Partners:
R2601_06943
Uncharacterized protein (149 aa)
              0.860
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
 
    0.820
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
   
 
    0.818
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
 
    0.801
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
 
    0.801
R2601_07528
Mercuric reductase (482 aa)
 
 
    0.722
R2601_14175
Dihydrolipoamide dehydrogenase (466 aa)
 
 
    0.718
R2601_07533
Regulatory protein (450 aa)
 
 
    0.705
R2601_17349
ABC transporter, periplasmic binding protein (400 aa)
 
          0.693
R2601_07018
Cytochrome c-type biogenesis protein cycH (383 aa)
 
          0.679
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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